Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Swm_02350

smpp Syntrophomonas wolfei methylbutyratica 4J5
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
RNA polymerase sigma factor
Gene
—
Location
NZ_CM161534.1:2,596,017–2,596,478 (−)   153 aa
Keys
gbid 939571   gene_oid 8108584577  

Domain architecture

Pfam domain
Pfam signature: pfam08281

Putative operon (same contig + strand, gap ≤ 50 bp)

Swm_02349 Swm_02350 ◀   → reaction activity for this operon

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

11 proteins across 7 genomes share architecture group #1425  pfam08281

GenomeLocusaaSP/TMPfam order
Syntrophomonas wolfei methylbutyratica 4J5 Swm_00298 161 pfam08281
Syntrophomonas wolfei methylbutyratica 4J5 Swm_02350 ◀ 153 pfam08281
Syntrophomonas curvata DSM15682 / GL#14 Scur_00167 77 pfam08281
Syntrophomonas curvata DSM15682 / GL#14 Scur_00343 127 pfam08281
Syntrophomonas curvata DSM15682 / GL#14 Scur_00577 141 pfam08281
Syntrophomonas erecta DSM 16215 / GB-438 Ser_02058 76 pfam08281
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_01203 76 pfam08281
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01279 77 pfam08281
Syntrophomonas palmitatica JCM14374 Spalm Spalm_01555 86 pfam08281
Syntrophomonas wolfei saponavida / SD2 Sws_01232 78 pfam08281
Syntrophomonas zehnderi OL-4 Szehn Szeh_00447 77 pfam08281
↑ Top




v1.00 @copyright 2026 UCLA