Small Microbes Pathway Profiler

Domain Counts
Profiler Search and BLAST
CAZy ▾
CAZyme Browser CAzy - DBCAN (original) CAZyme protein counts Proteome Coverage Summary
Search ▾
Text search Domain display search
Pathways ▾
Nitrogen Fixation CANT-Hyd
UMAP
◀ domain architecture  ·  operons  ·  ❔ guide
enter a locus id, or use ?gbid= / ?gene_oid=

Sws_00949

smpp Syntrophomonas wolfei saponavida
operons in this genome ▶  ·  domain architectures ▶  ·  reaction activity ▶
✕

Identity & position

Product
DNA-directed RNA polymerase subunit beta
Gene
rpoB
Location
NZ_CM161535.1:1,009,218–1,012,679 (−)   1153 aa
Keys
gbid 1718640   gene_oid 8099422816  

Domain architecture

Pfam domain
Pfam signature: pfam04563,pfam04561,pfam04565,pfam10385,pfam00562,pfam04560

Putative operon (same contig + strand, gap ≤ 300 bp)

Sws_00944 Sws_00945 Sws_00946 Sws_00947 Sws_00948 Sws_00949 ◀ Sws_00950 Sws_00951 Sws_00952 Sws_00953 Sws_00954 Sws_00955 Sws_00956 Sws_00957 Sws_00958   → reaction activity for this operon

Same architecture across genomes — proteins sharing this exact Pfam-domain signature

7 proteins across 7 genomes share architecture group #1269  pfam00562,pfam04560,pfam04561,pfam04563,pfam04565,pfam10385

GenomeLocusaaSP/TMPfam order
Syntrophomonas wolfei saponavida / SD2 Sws_00949 ◀ 1153 pfam04563,pfam04561,pfam04565,pfam10385,pfam00562,pfam04560
Syntrophomonas curvata DSM15682 / GL#14 Scur_02722 1122 pfam04563,pfam04561,pfam04565,pfam10385,pfam00562,pfam04560
Syntrophomonas erecta DSM 16215 / GB-438 Ser_02302 1125 pfam04563,pfam04561,pfam04565,pfam10385,pfam00562,pfam04560
Syntrophomonas erecta sporosyntropha Sespor / JCM 13344 Sesp_00903 1125 pfam04563,pfam04561,pfam04565,pfam10385,pfam00562,pfam04560
Syntrophomonas wolfei methylbutyratica 4J5 Swm_02746 1109 pfam04563,pfam04561,pfam04565,pfam10385,pfam00562,pfam04560
Syntrophomonas wolfei subsp. wolfei Goettingen Swg_02388 1107 pfam04563,pfam04561,pfam04565,pfam10385,pfam00562,pfam04560
Syntrophomonas zehnderi OL-4 Szehn Szeh_01080 1139 pfam04563,pfam04561,pfam04565,pfam10385,pfam00562,pfam04560
↑ Top




v1.00 @copyright 2026 UCLA